Default configuration fileΒΆ
default.intg as generated by T-UGOm-GUI:
% Keyword input file for tUGOm 2.0 and later. The suggested suffix is .intg
%
% Sections started with #<keywordSection>
%
% Within sections the form is <keyword> = value(s) optional comments
% [on one line]. At least 1 space is needed each side of the "=".
%
% The order of the sections and the order of the keywords within
% sections does not matter, but there can only be one of each
% type of section and data must be specfic to that section.
%
% Extra characters to the right of the input value(s) are ignored.
%
% Lines beginning with "%" are copied directly to the echo file
% in the section where they occur in input and are ignored
% for input.
%
% With the exception of the #model section, no other section has to
% appear in this input file.
%
% At least one type of forcing needs to be specified.
%
% Lines which have defaults identified can be excluded if the
% defaults match your desired run parameters.
%
#version
revision = <default> Mercurial revision 3660:fcaf45d58831 of 2025-10-09 11:44 +0200 //T-UGOm revision number (at latest tugo or gui file processing)
branch = <default> Mercurial branch default //T-UGOm branch name (at latest tugo or gui file processing)
##
#model
rootname = <default> NONE //Path of grid file
time_step = <default> NONE //time step
sub_time_step = <default> $TimeStep/3.0 //sub time step
nSubCycles = <default> 1 //some comments
time_origine = <default> 1950-01-01 00:00:00 //time origine
mesh_format = <default> nei //mesh format
mesh_type = <default> TRIANGULAR //mesh type
mesh_meta = <default> NONE //input-output var names for when mesh_type=STRUCTURED
mesh_file = <default> $rootname.$MeshType //Alternative path of grid file (only for when mesh_format=nei)
mesh_proj4 = <default> NONE //proj4 parameters for cartesian grids
bel_file = <default> NONE //bel file
run_duration = <default> 48.0 //run duration in hours
spin_up = <default> 48.0 //spin up
spin_up_mode = <default> LINEAR //spin up mode
cold_start_ssh = <default> NONE //cold start SSH filename
restart_file = <default> COLD-START //start condition Or filename
restart_format = <default> NETCDF //Type of the file used for restart
ContinuationFlag = <default> DISABLED //enable/disable rolling continuation files (and associated ASCII snapshots) production
continuation_file = <default> tugo_restart //Restart files rootname
continuation_format = <default> NETCDF //Restart file format
continuation_interval = <default> 10800.0 //Restart interval
automatic_interval = <default> MONTHLY //Restart interval
output_path = <default> . //default pathname for model outputs
solver_type = <default> SpDOMESTIC //Solver Type
sub_solver_type = <default> AUTO //Solver Type
auxilliary_solver_type = <default> AUTO //Solver Type
SolverShowPerfs = <default> 0 //#tics for linear solver performance display
solver_mode = <default> AUTO //Solver mode
mode = <default> 2D //simulation mode
compressibility = <default> BOUSSINESQ //compressibility mode
pressure_mode = <default> HYDROSTATIC //pressure mode
wetting_drying = <default> DISABLED //wetting/dryinc capabilities
OPENMP_nCPUsMax = <default> -1 //Max number of CPUs allowed in OPENMP optimisation
ProcessPartitioning = <default> TRUE //process partition using METIS executables
UnpartitionedProcessing = <default> COLLECTIVE //global informations processing
PartitionBalancing = <default> FALSE //process partition will try to balance extra-load due to sub-cycling
ParallelMatrixDistribution = <default> AUTO //matrix distribution in parallel solver
ParallelRHSDistribution = <default> AUTO //RHS distribution in parallel solver
ParallelSolutionDistribution = <default> AUTO //solution distribution in parallel solver
MetisPath = <default> /home/softs/metis-5.1.0/build/Linux-x86_64/programs/mpmetis //path to METIS partitioner (mpmetis -gtype=nodal)
ArchivePartitionedMesh = <default> FALSE //archive MPI partition mesh
ArchiveMeshPartition = <default> FALSE //archive mesh MPI partition
PartitionMinElements = <default> 2000 //minumum number of elements per partition
3d_pressure = <default> FALSE //FLAG
echo_file = <default> tugo.echo //echo filename
Stream_TMPDIR = <default> AUTO //handle stream access mode
##
#physics
gravity_mode = <default> CONSTANT //gravitational constant definition
love_numbers_mode = <default> CONSTANT //Love numbers mode
anelastic_body_tide = <default> FALSE //anelastic body tide flag
linear_LSA_coefficient = <default> 0.1 //linear LSA coefficient
gravity_adjustment = <default> NONE //gravitational constant adjustment
coriolis_mode = <default> LATITUDE-DEPENDANT //coriolis parameter definition
coriolis_latitude = <default> 0.0 //coriolis latitude
minimum_cosine = <default> 1.e-04 //minimum cosine(latitude) in dynamic equations
water_viscosity = <default> 1.0e-06 //water viscosity
##
#dissipation
min_background_speed = <default> 0.05 //some comments
background_velocity_mode = <default> UNDEFINED //some comments
BKG_polygones = <default> NONE //some comments
BKG_values = <default> NONE //some comments
background_velocity_file = <default> NONE //some comments
bottom_friction_type = <default> QUADRATIC //some comments
bottom_rugosity_file = <default> NONE //prescribed z0 file, LGP1 discretisation
linear_friction_coeff = <default> 2.5e-3 //default linear bottom friction coefficient (r)
quadratic_friction_coeff = <default> 2.5e-3 //default quadratic bottom friction coefficient (Cd)
QFC_polygones = <default> NONE //some comments
QFC_values = <default> NONE //some comments
roughness_length = <default> 1.0e-4 //equivalent roughness length (z0) in quadratic bottom friction coefficient (Cd) computation
min_quadratic_friction_coeff = <default> -999 //minimum value for Cd when using roughness formulation
QFCM_polygones = <default> NONE //some comments
QFCM_values = <default> NONE //some comments
bottom_coeff_file = <default> NONE //prescribed Cd file, LGP1 discretisation
rugosity_polygones = <default> NONE //some comments
rugosity_values = <default> NONE //some comments
rugosity_values_by_regions = <default> NONE //some comments
manning_coefficient = <default> 1.e-02 //default Manning coefficient (n)
manning_coefficient_file = <default> NONE //prescribed Manning coefficient file, LGP1 discretisation
localized_parameters_echoing = <default> FALSE //some comments
internal_drag_algorithm = <default> 0 //some comments
internal_drag_slope = <default> 0.00 //some comments
internal_drag_hmin = <default> 300 //some comments
internal_drag_hmax = <default> 500 //some comments
internal_drag_polygones = <default> NONE //some comments
internal_drag_values = <default> NONE //some comments
internal_drag_values_by_regions = <default> NONE //some comments
internal_drag_rugosity = <default> 0.00 //some comments
mixed_layer_coeff = <default> 0.00 //some comments
min_horizontal_viscosity = <default> 1.00 //some comments
max_horizontal_viscosity = <default> 1000.00 //some comments
smagorinsky_coefficient = <default> 0.28 //some comments
smagorinski_coefficient_polygons = <default> NONE //some comments
smagorinski_coefficient_values = <default> NONE //some comments
horizontal_viscosity_mode = <default> SMAGORINSKY //some comments
lateral_friction_type = <default> LINEAR //some comments
lateral_friction_linear_coeff = <default> 1.0e-3 //some comments
brunt_vassalla_value = <default> 0.002 //some comments
brunt_vassalla_file = <default> NONE //some comments
shear_drag_flag = <default> FALSE //dissipation in mixing layer
##
#dissipation3D
min_background_speed = <default> 0.05 //some comments
BKG_polygones = <default> NONE //some comments
BKG_values = <default> NONE //some comments
background_velocity_file = <default> NONE //some comments
bottom_friction_type = <default> QUADRATIC //some comments
bottom_rugosity_file = <default> NONE //prescribed z0 file, LGP1 discretisation
linear_friction_coeff = <default> 2.5e-3 //default linear bottom friction coefficient (r)
quadratic_friction_coeff = <default> 2.5e-3 //default quadratic bottom friction coefficient (Cd)
QFC_polygones = <default> NONE //some comments
QFC_values = <default> NONE //some comments
roughness_length = <default> 1.0e-4 //equivalent roughness length (z0) in quadratic bottom friction coefficient (Cd) computation
min_quadratic_friction_coeff = <default> -999 //minimum value for Cd when using roughness formulation
QFCM_polygones = <default> NONE //some comments
QFCM_values = <default> NONE //some comments
bottom_coeff_file = <default> NONE //prescribed Cd file, LGP1 discretisation
rugosity_polygones = <default> NONE //some comments
rugosity_values = <default> NONE //some comments
rugosity_values_by_regions = <default> NONE //some comments
internal_drag_algorithm = <default> 0 //some comments
internal_drag_slope = <default> 0.00 //some comments
internal_drag_hmin = <default> 300 //some comments
internal_drag_hmax = <default> 500 //some comments
internal_drag_polygones = <default> NONE //some comments
internal_drag_values = <default> NONE //some comments
internal_drag_values_by_regions = <default> NONE //some comments
internal_drag_rugosity = <default> 0.00 //some comments
mixed_layer_coeff = <default> 0.00 //some comments
min_horizontal_viscosity = <default> 1.00 //some comments
max_horizontal_viscosity = <default> 1000.00 //some comments
smagorinsky_coefficient = <default> 0.28 //some comments
horizontal_viscosity_mode = <default> SMAGORINSKY //some comments
brunt_vassalla_value = <default> 0.002 //some comments
brunt_vassalla_file = <default> NONE //some comments
shear_drag_flag = <default> FALSE //dissipation in mixing layer
##
#tide
tide_flag = <default> FALSE //some comments
AstronomicPotentialFlag = <default> FALSE //enable/disable gravitational forcing
LSA_flag = <default> FALSE //enable/disable LSA forcing
LSA_directory = <default> NONE //pathname for LSA input files
LSA_input_settings = <default> file=XXX.nc format=NETCDF amplitude=XXX phaselag=XXX //LSA input file settings
Atlas_directory = <default> NONE //Tidal atlas pathname for online OBC computation
Atlas_convention = <default> NONE //ocean tides atlas filename template (such as WAVE.tide.nc)
pressure_flag = <default> FALSE //enable/disable atmospheric pressure forcing
pressure_directory = <default> NONE //pathname for atmospheric pressure input files
pressure_input_setting = <default> file=XXX.nc format=NETCDF amplitude=XXX phaselag=XXX //harmonic pressure input file settings
pressure_elligibles = <default> S2 S1 Sa //LSA input file settings
horizontal_diffusion = <default> FALSE //enable/disable spectral horizontal diffusion
admittance = <default> FALSE //enable/disable admittance spectrum extension
equilibrium = <default> FALSE //enable/disbale equilibrium tide onnline OBC computation
nodal_correction = <default> FALSE //enable/disable nodal corrections
LSA_coeff = <default> 0.0 //some comments
tidal_BC = <default> FALSE //enable/disable tidal boundary conditions
BC_tide_file = <default> NONE //tidal boundary conditions input file
boundary_tide_interpolation = <default> COMPLEX //tidal boundary conditions interpolation type
spectral_solver = <default> FALSE //enable/disable 2D-spectral tidal solver
solver_type = <default> SpDOMESTIC //spectral linear solver
dominant_wave_1 = <default> M2 //1st dominant wave for spectral solver
dominant_wave_2 = <default> K1 //2nd dominant wave for spectral solver
prior_solution = <default> NONE //prior solution for friction
spectral_paire = <default> DGP1xLGP2 //discretisation for spectral solver
spectral_max_iteration = <default> 10 //max iterations for dominant waves in spectral solver
compound_max_iteration = <default> 10 //max iterations for compound waves in spectral solver
spectral_specific_data = <default> FALSE //use discretisation-specific database for spectral solver
spectral_topo_file = <default> NONE //specific topography for spectral solver (u-discretisation compatible)
spectral_slope_file = <default> NONE //specific topography's slope for spectral solver (u-discretisation compatible)
spectral_recycle = <default> FALSE //recycle spectral solutions for tidal OBCs
spectral_archive_level = <default> STANDARD //spectral solutions archive extent
spectral_archive_ascii = <default> FALSE //spectral solutions ASCII archive
spectral3D_solver = <default> DISABLED //enable/disable 3D-spectral tidal solver
spectral3D_max_reduced_modes = <default> -1 //max number of modes in reduced solver
spectral3D_max_analysed_modes = <default> -1 //max number of modes in diagnostics
spectral3D_OBCs = <default> BAROTROPIC //OBCs
spectral3D_OBCs_MaxModes = <default> -1 //max. number of modes for radiationnal conditions
radiational_OBCs_DispersionAdjustment = <default> FALSE //adjust celerity to account for numerical dispersion
spectral_density_advection = <default> EXPLICIT //density advection mode
spectral_density_relaxation = <default> 0.0 //dspectral density relaxation frequency
diffusion_duration = <default> 72 //integration duration turbulence model
diffusion_time_step = <default> 120 //time step for turbulence model
spectral3D_max_iteration = <default> 10 //max iterations for dominant waves in 3D-spectral solver
spectral3D_first_iteration = <default> 0 //first iteration for dominant waves in 3D-spectral solver
spectral3D_archive_level = <default> STANDARD //spectral solutions archive content
spectral3D_modal_analysis = <default> STANDARD //spectral 3D solutions vertical modes analysis
##
#atmosphere
atmosphere_flag = <default> FALSE //some comments
pressure_flag = <default> FALSE //some comments
pressure_directory = <default> AUTO //pathname for atmospheric pressure input files
pressure_convention = <default> AUTO //pressure forcing filename formatting
pressure_variable = <default> MSL //pressure variable
pressure_equivalent_water_density = <default> 1019.368 //pressure equivalent water density
IB_equivalent_water_density = <default> 1019.368 //IB equivalent water density
wind_flag = <default> FALSE //some comments
uwind_variable = <default> U10M //eastward u-wind variable
vwind_variable = <default> V10M //northward v-wind variable
temperature_flag = <default> FALSE //some comments
surface_air_temperature = <default> T2m //some comments
surface_water_temperature = <default> SST //some comments
long_wave_radiation = <default> FALSE //some comments
short_wave_radiation = <default> FALSE //some comments
atmospheric_directory = <default> NONE //some comments
file_format = <default> NETCDF //some comments
file_endian = <default> UNIX //some comments
file_convention = <default> NONE //atmospheric forcing file convention
MaskFile = <default> NONE //unused
mask_variable = <default> NONE //atmosphere land/sea mask variable
apply_landsea_mask = <default> FALSE //apply land/sea mask on meteorological fields
keep_mean_pressure = <default> FALSE //some comments
keep_mean_wind = <default> TRUE //some comments
time_interpolation = <default> LINEAR //some comments
bulk_formula = <default> CLASSIC //some comments
inversebarometer = <default> FALSE //will use IB in open boundaries conditions
verbose_level = <default> MINIMAL //some comments
##
#OceanWaves
OceanWaves_flag = <default> FALSE //some comments
ProfileParameterisation = <default> LINEAR //w vertical profile parameterisation for non-hydrostatic shallow-water
AiryPeriod = <default> 10. //surface wave period for non-hydrostatic, time-stepping shallow-water
EnforceContinuity = <default> FALSE //enforce continuity equation weight in GWE formulation
EnforceDryingLock = <default> FALSE //enforce drying lock
WaveBreakingFormulation = <default> NONE //surface wave breaking parameterisation formulation
FroudeCoefficient = <default> 1.+01 //scaling coefficient for Froude diffusion
OceanWavesForcing_flag = <default> FALSE //some comments
parameterisation = <default> MAC-WILLIAMS //some comments
drag_flag = <default> FALSE //some comments
friction_flag = <default> FALSE //some comments
time_interpolation = <default> LINEAR //some comments
discretisation = <default> UNSTRUCTURED //some comments
file_directory = <default> NONE //some comments
file_format = <default> WW3_SG_NETCDF //input format of ocean waves forcing
file_convention = <default> NONE //some comments
MaskFile = <default> NONE //some comments
##
#boundaries
type = <default> 1 //clamped:1, Flather:2, Orlanski:3, delayed_Flather:7, all others:crash
mode = <default> LOCAL //some comments
relax_time = <default> 2.0 //some comments
archived_BC_use = <default> FALSE //some comments
archived_BC_directory = <default> NONE //some comments
archived_BC_format = <default> BINARY //some comments
archived_BC_input-settings = <default> file=ROOTNAME.YYYY.MM.nc ssh=XXX u=XXX v=XXX mode=UNSTRUCTURED //archived_BC input file settings
archived_BC_offset = <default> NONE //archived_BC elevation offset (to be added to prescribed BC values)
archived_BC_units = <default> MKS //some comments
archived_BC_transport = <default> u //some comments
CirculationOBCs_flag = <default> FALSE //some comments
CirculationOBCs_directory = <default> NONE //some comments
CirculationOBCs_format = <default> NETCDF //some comments
CirculationOBCs_input-settings = <default> file=ROOTNAME.YYYY.MM.nc ssh=XXX u=XXX v=XXX mode=UNSTRUCTURED //archived_BC input file settings
CirculationOBCs_offset = <default> NONE //archived_BC elevation offset (to be added to prescribed BC values)
CirculationOBCs_units = <default> MKS //some comments
CirculationOBCs_transport = <default> u //some comments
PermanentTide_Flag = <default> FALSE //add permanent tide (OBCs and tide potential)
periodic_conditions_file = <default> NONE //contains instructions for boundary condition periodicity
sponge_flag = <default> FALSE //some comments
PML_factor = <default> 0.0 //attenuation factor in PML absorbing zone
RelaxationFlag = <default> FALSE //activate/inhibate relaxation in buffer zone
RelaxationTimeScale = <default> 0.0 //relaxation time scale for relaxation buffer zone
RelaxationLengthScale = <default> 0.0 //relaxation length scale for relaxation buffer zone
LinearityFlag = <default> FALSE //activate/inhibate model linearity in buffer zone
LinearityLengthScale = <default> 0.0 //linearity length scale for radiative buffer zone
buffer_zone_file = <default> NONE //contains instructions for open boundaries buffers
rivers_flag = <default> FALSE //some comments
rivers_file = <default> rivers.dat //some comments
solid_boundary_condition = <default> FREE-SLIP //some comments
no_slip_size = <default> 100.0 //some comments
##
#ice
ice_dynamic_flag = <default> FALSE //some comments
ice_cover_file = <default> NONE //some comments
ice_elasticity_file = <default> NONE //some comments
TimeStep = <default> 60 //some comments
MomentumSolver = <default> 1 //some comments
Rheology = <default> 1 //some comments
ice_friction_flag = <default> FALSE //some comments
ice_polygons_file = <default> NONE //ice limits polygons (free format)
ice_polygons_data = <default> NONE //ice polygons data
ice_shelves_raster = <default> NONE //ice shleves cover raster
ice_concentration = <default> NONE //ice concentration
ice_concentration_threshold = <default> 0.5 //ice concentraton threshold
ice_confinement_modulation = <default> NONE //ice confinement modulation
ice_shelves_friction_type = <default> QUADRATIC //some comments
sea_ice_friction_type = <default> LINEAR //some comments
ice_linear_friction_coefficient = <default> 2.5e-3 //default linear bottom friction coefficient (r)
ice_karman_rugosity = <default> 1.0e-4 //some comments
ice_quadratic_friction_coefficient = <default> 2.5e-3 //default quadratic bottom friction coefficient (Cd)
ice_shelves_multiplicator = <default> 2.0 //friction factor applied below ice shelves
ice_friction_smoother = <default> LEGACY //some comments
ice_smoother_niterations = <default> 50 //some comments
##
#topography
OnOffFlag = <default> FALSE //some comments
bottom_motion_flag = <default> FALSE //some comments
bottom_motion_directory = <default> NONE //some comments
bottom_motion_file_convention = <default> NONE //some comments
topo_file = <default> NONE //bathymetry file
slope_file = <default> NONE //bathymetry gradient's file
zmin_file = <default> NONE //minimum elevation file
relative_minimum_depth = <default> 5.0 //minimum depth relative to minimum elevation
minimum_depth = <default> 10.0 //overall minimum depth in model bathymetry
minimum_depth_polygons = <default> NONE //minimum depth polygon file
minimum_depth_values = <default> NONE //minimum depth data file
depth_offset = <default> 0.0 //overall depth offset
depth_offset_polygons = <default> NONE //depth offset polygon file
depth_offset_values = <default> NONE //depth offset data file
mean_level_file = <default> NONE //mean dynamic topography
mean_level_offset = <default> TRUE //apply mean dynamic topography offset to depths
depth_scale_factor = <default> 1.0 //depth scale factor
depth_scale_polygons = <default> NONE //depth scale polygons file
depth_scale_values = <default> NONE //depth scale data file
distance_to_coast = <default> NONE //distance-to-coast file
drying_minimum_depth = <default> 0.10 //numerical minimum depth set at dry nodes
drying_threshold = <default> 0.0 //depth threshold to select dry nodes
drying_minimum_layer_depth = <default> AUTO //numerical minimum layer depth set at dry nodes
##
#miscellaneous
non_tidal_loading_flag = <default> FALSE //some comments
checks = <default> FALSE //some comments
Check_Wconsistency = <default> FALSE //some comments
CompatibilityScale = <default> 1.0 //some comments
2D_3D_coupling = <default> TRUE //some comments
SmoothZField = <default> FALSE //some comments
SmoothUField = <default> FALSE //some comments
SmoothAdvection = <default> FALSE //some comments
SmoothDiffusion = <default> FALSE //some comments
flush_tracking = <default> FALSE //some comments
time_echoing_interval = <default> 10 //echo time every N time steps
echoing_scope = <default> MASTER-CPU //some comments
dump_crash_files = <default> FALSE //dump crash files on failure exit
print_spectral2D_matrix = <default> FALSE //some comments
print_spectral3D_matrix = <default> FALSE //some comments
spectral2D_solving_verbose = <default> FALSE //some comments
spectral3D_solving_verbose = <default> FALSE //some comments
toponyms_file = <default> NONE //ocean partition codes
##
#stability
Stability_Check = <default> TRUE //unstability check
Stability_Control = <default> DYNAMIC //unstability processing mode
Stability_MindZdT = <default> 1.e-04 //minimum elevation time derivative for 2D stability control (subcycling)
Stability_Start = <default> 0 //stability checks start latency
Max_Delta_Elevation = <default> 4.0 //some comments
Max_Delta_Currents = <default> 4.0 //some comments
Max_Delta_Period = <default> 3600. //some comments
maximum_admissible_elevation = <default> 20.0 //some comments
persistence = <default> 6. //persistence duration of previously unstable node in subcycling
SubcyclingTemporization = <default> 10 //max successive subcyling reprocessing
SubcyclingExtension = <default> 5 //minimum neighbour band between subcyle mesh limits
SubcyclingLockLimit = <default> 5 //if node get unstable more than lock limit time, stay infinitely at its highest subcycling level
SubcyclingCFLratio = <default> 2 //to compare CFL and dT/ratio
CFL_min_depth = <default> 4. //some comments
CFL_depth_offset = <default> 0. //some comments
CFL_velocity = <default> 0. //some comments
ArchiveSubcyclingMesh = <default> FALSE //archive MPI partition mesh
ArchiveSubcyclingLevels = <default> NONE //subcycling levels archive
ReloadSubcyclingLevels = <default> NONE //subcycling levels reload
##
#fe_archive
% if no line follow the fe archives use only defaults values
OnOffFlag = <default> FALSE //some comments
state_file = <default> tugo-state //some comments
separate_mesh_file = <default> NONE //use a separate file for mesh and discretisation base data archive
archive_format = <default> NETCDF //some comments
archive_convention = <default> YYYY.MM //some comments
archive_start = <default> 0.0 //some comments
archive_interval = <default> 10800.0 //some comments
overwrite_append_flag = <default> APPEND //some comments
archive_max_precision = <default> 8 //bytes: int2 (2) not yet implemented; single precision(4); double precision(8)
mask_dried = <default> TRUE //mask dried nodes/elements in archive
vector_file = <default> tugo-forcing //some comments
archive_bits = <default> 2 //some comments
archive_huvscale = <default> 100 100 100 //some comments
archive_pWsxWsy_scale = <default> 1000 1000 1000 //some comments
surface_elevation = <default> TRUE //some comments
water_depth = <default> FALSE //some comments
barotropic_currents = <default> TRUE //some comments
mean_surface_elevation = <default> FALSE //some comments
mean_barotropic_currents = <default> FALSE //some comments
surface_elevation_extrema = <default> FALSE //some comments
mean_kinetic_energy2D = <default> FALSE //some comments
horizontal_diffusion2D = <default> FALSE //some comments
horizontal_advection2D = <default> FALSE //some comments
transport2D = <default> FALSE //some comments
divergence2D = <default> FALSE //some comments
friction_coefficient = <default> FALSE //some comments
CFL2D = <default> FALSE //some comments
cycles = <default> FALSE //some comments
unstables = <default> FALSE //some comments
horizontal_currents = <default> TRUE //some comments
vertical_velocity = <default> TRUE //some comments
temperature = <default> FALSE //some comments
salinity = <default> FALSE //some comments
density = <default> FALSE //some comments
horizontal_diffusion = <default> FALSE //some comments
horizontal_advection = <default> FALSE //some comments
lateral_mixing = <default> FALSE //some comments
IB-departure = <default> FALSE //some comments
atmospheric_surface_pressure = <default> FALSE //some comments
wind_stress = <default> FALSE //some comments
wind_stress_divergence = <default> FALSE //some comments
tidal_forcing = <default> FALSE //some comments
radiation_stress = <default> FALSE //some comments
gradSxx = <default> FALSE //some comments
ice_parameters = <default> FALSE //some comments
verbose_level = <default> MINIMAL //some comments
##
#structured_archive
OnOffFlag = <default> FALSE //some comments
zone = <default> AUTO //define structured grid
overwrite_append_flag = <default> APPEND //some comments
archive_convention = <default> YYYY.MM //some comments
start = <default> 0.0 //some comments
interval = <default> 10800.0 //some comments
archive_max_precision = <default> 4 //bytes: int2 (2) not yet implemented; single precision(4); double precision(8)
surface_elevation = <default> TRUE //some comments
barotropic_currents = <default> TRUE //some comments
horizontal_diffusion2D = <default> FALSE //some comments
horizontal_advection2D = <default> FALSE //some comments
transport2D = <default> FALSE //some comments
divergence2D = <default> FALSE //some comments
surface_elevation_extrema = <default> FALSE //some comments
mean_kinetic_energy2D = <default> FALSE //some comments
friction_coefficient = <default> FALSE //some comments
IB-departure = <default> FALSE //some comments
atmospheric_surface_pressure = <default> FALSE //some comments
wind_stress = <default> FALSE //some comments
horizontal_currents = <default> TRUE //some comments
vertical_velocity = <default> TRUE //some comments
temperature = <default> FALSE //some comments
salinity = <default> FALSE //some comments
density = <default> FALSE //some comments
horizontal_diffusion = <default> FALSE //some comments
horizontal_advection = <default> FALSE //some comments
pressure_gradient = <default> FALSE //some comments
lateral_mixing = <default> FALSE //some comments
tracer_2d = <default> FALSE //some comments
radiation_stress = <default> FALSE //some comments
verbose_level = <default> MINIMAL //some comments
##
#sample_points
% if no line follow the sample points use only defaults values
OnOffFlag = <default> FALSE //some comments
file = <default> tugoPlot.input //some comments
start = <default> 0.0 //some comments
save_interval = <default> 1800 //some comments
overwright_append_flag = <default> APPEND //some comments
SectionOnOffFlag = <default> FALSE //some comments
SectionInputFile = <default> NONE //some comments
SectionStart = <default> 0.0 //some comments
SectionSaveInterval = <default> 1800 //some comments
SectionOverAppendFlag = <default> APPEND //some comments
SectionTerminalEchoing = <default> FALSE //some comments
##
#analysis
% if no line follow the harmonic analysis use only defaults values
OnOffFlag = <default> FALSE //some comments
list_file = <default> NONE //some comments
auto_completion = <default> TRUE //if list file not given, do spectrum auto-completion
harmonic_start = <default> 2*#MODEL.$spinup./3600/24.0 //time after which analysis starts, in days. Must be longer than spinup
sample_interval = <default> 1800 //some comments
compute_interval = <default> 365 //some comments
rayleigh_factor = <default> 0.5 //Rayleigh criterion = (1 cycle difference over acquisition time span) x threshold
admittance_method = <default> SPLINE //admiiatnce method appicable for harmonic analysis
strategy = <default> FULL //some comments
sequential_recycle = <default> MANAGED //recycle sequential solutions for tidal OBCs
sequential_archive_level = <default> STANDARD //sequential solutions archive content
LGP1ArchiveFlag = <default> FALSE //create a LGP1xLGP1 ASCII archive for compatibility purposes
ASCIIArchiveFlag = <default> FALSE //create a ASCII UG archive (on computational discretisation)
NETCDFArchiveFlag = <default> TRUE //create a netcdf UG archive (on computational discretisation)
SGFlag = <default> FALSE //some comments
zone = <default> AUTO //define strucured grid
surface_elevation = <default> TRUE //some comments
horizontal_currents = <default> TRUE //some comments
LSA_potential = <default> TRUE //some comments
##
#diagnostics
% if no line follow the harmonic analysis use only defaults values
StatisticsFlag = <default> FALSE //some comments
StatisticsAverage = <default> FALSE //performs average processing
StatisticsMinmax = <default> FALSE //performs min/max processing
StatisticsCollectionStart = <default> 2*#MODEL.$spinup./3600/24.0 //some comments
StatisticsCollectionInterval = <default> 12 //some comments
StatisticsCollectionTics = <default> 600 //some comments
StatisticsCollectionDuration = <default> 12 //some comments
DiagnosticsSetting = <default> id=NONE active=FALSE start=0 interval=12 tics=600 duration=12 //runtime diagnostics setting
DiagnosticsSetting = <default> id=NONE active=FALSE start=0 interval=12 tics=600 duration=12 //runtime diagnostics setting
DiagnosticsSetting = <default> id=NONE active=FALSE start=0 interval=12 tics=600 duration=12 //runtime diagnostics setting
DiagnosticsSetting = <default> id=NONE active=FALSE start=0 interval=12 tics=600 duration=12 //runtime diagnostics setting
DiagnosticsSetting = <default> id=NONE active=FALSE start=0 interval=12 tics=600 duration=12 //runtime diagnostics setting
DiagnosticsSetting = <default> id=NONE active=FALSE start=0 interval=12 tics=600 duration=12 //runtime diagnostics setting
DiagnosticsSetting = <default> id=NONE active=FALSE start=0 interval=12 tics=600 duration=12 //runtime diagnostics setting
DiagnosticsSetting = <default> id=NONE active=FALSE start=0 interval=12 tics=600 duration=12 //runtime diagnostics setting
DiagnosticsSetting = <default> id=NONE active=FALSE start=0 interval=12 tics=600 duration=12 //runtime diagnostics setting
DiagnosticsSetting = <default> id=NONE active=FALSE start=0 interval=12 tics=600 duration=12 //runtime diagnostics setting
StatisticsFileConvention = <default> diagnostics-YYYY.MM.nc //filename template for diagnostics archiving
##
#energy_budget
% if no line follow the energy budget use only defualts values
OnOffFlag = <default> FALSE //some comments
start = <default> 0.0 //some comments
interval = <default> 1800 //some comments
time_step_energy_budget = <default> FALSE //some comments
harmonic_energy_budget = <default> FALSE //some comments
harmonic_energy_budget_by_regions = <default> NONE //some comments
LGP1ArchiveASCII = <default> FALSE //create a LGP1 ASCII archive for compatibility purposes
resonance_exploration = <default> FALSE //some comments
resonance_frequencies = <default> NONE //some comments
##
#tracers
% if no line follow the energy budget module use only defaults values
tracers_computation = <default> FALSE //some comments
start = <default> 0.0 //some comments
interval = <default> 1800 //some comments
time_integration = <default> LEAPFROG //some comments
input_file = <default> tracers.dat //some comments
initialisation_file = <default> NONE //some comments
horizontal_diffusion_mode = <default> DEFAULT //some comments
horizontal_diffusion_coefficient = <default> 0.0 //some comments
smagorinsky_coefficient = <default> 2.8 //some comments
upwind_coefficient = <default> 0.1 //some comments
##
#drifters2D
% if no line follow the tracers module use only defaults values
drifters2D_computation = <default> FALSE //some comments
start = <default> 0.0 //some comments
interval = <default> 1800 //some comments
input_file = <default> drifters2D.dat //some comments
##
#dynamics2D
% if no line follow the 3D module use only defaults values
WaveEquationForm = <default> GWE-CLX //continuity equation type
Continuity2D_integration = <default> FORWARD //continuity time scheme
Momentum2D_integration = <default> FORWARD //momentum time scheme
Momentum2D_mode = <default> VELOCITY //velocity/transport option in model state variables
Advection2D_mode = <default> NON-CONSERVATIVE //some comments
AdvectionDiffusion_discretisation = <default> NODE-WISE //some comments
SLV_discretisation = <default> LGP1-CG //elevation/pressure/tracer discretisation
v2D_discretisation = <default> LGP1-CG //velocity discretisation
G2D_discretisation = <default> INTRINSIC //pressure gradient discretisation
wave_scalar_prouct = <default> QUADRATURE //type of scalar product in wave equation discretization
wave_equation_stencil = <default> IMPLICIT //type of prssure gradient stencil in wave equation
tau_0 = <default> 2e-4 //weight of CE in GWE (more by clicking...)
theta = <default> 0.75 //implicit/explicit coefficient (more by clicking...)
barotropic_w = <default> FALSE //compute vertical velocity checks
horizontal_viscosity_mode = <default> SMAGORINSKY //horizontal diffusion
upwind_coefficient = <default> 0.1 //upwind in diffusion computation(more by clicking...)
AsselinFilteringH = <default> FALSE //Asselin coefficient for elevation (Leapfrog)
AsselinFilteringU = <default> TRUE //Asselin coefficient for velocity (Leapfrog)
AsselinCoefficientC1 = <default> 0.1 // (1-c)*Xn + 1/2*c(Xn-1 + Xn+1)
##
#dynamics3D
% if no line follow the 3D module use only defaults values
3D_computation = <default> FALSE //some comments
3D_time_step = <default> $2D_time_step //some comments
Momentum_integration = <default> LEAPFROG //some comments
3D_mode = <default> BAROCLINIC //some comments
pressure_mode = <default> HYDROSTATIC //some comments
w_derivation = <default> DIRECT //some comments
v_discretisation = <default> DGP1 //horizontal velocity discretisation
w_discretisation = <default> LGP1xLGP1 //vertical velocity discretisation, (horizontal)x(vertical)
p_horizontal_discretisation = <default> LGP1 //some comments
p_vertical_discretisation = <default> LGP1 //some comments
max_number_layers = <default> 20 //some comments
number_of_upper_horizontal_layers = <default> 0 //some comments
limit_of_upper_horizontal_layers = <default> -50 //some comments
level_distribution = <default> UNIFORM //some comments
level_displacement = <default> SURFACE-ONLY //some comments
level_optimisation = <default> NONE //some comments
turbulence_closure = <default> CONSTANT //some comments
lateral_diffusion_coefficient = <default> 0.0 //some comments
vertical_diffusion_coefficient = <default> 1.e-04 //some comments
##
#tracers3D
% if no line follow the tracers3D module use only defaults values
3D_computation = <default> TRUE //some comments
Tracers_integration = <default> FORWARD //some comments
tracers_mode = <default> DIAGNOSTIC //some comments
tracers_discretisation = <default> LGP0 //some comments
tracers_vertical_discretisation = <default> DGP1 //some comments
tracers_vertical_resolution = <default> 1 //some comments
tracers_advection_centering = <default> 0.5 //some comments
tracer_initialisation = <default> HOMOGENEOUS //some comments
initialisation_files_directory = <default> NONE //some comments
temperature_initialisation_file = <default> NONE //some comments
temperature_variable = <default> AUTO //name of temperature variable
salinity_initialisation_file = <default> NONE //some comments
salinity_variable = <default> AUTO //name of salinity variable
density_initialisation_file = <default> NONE //some comments
density_variable = <default> AUTO //name of density variable
tracer_profile_file = <default> NONE //some comments
tracers_initialisation = <default> VARIATIONAL //some comments
tracers_lateral_diffusion_coefficient = <default> 0.0 //some comments
tracers_horizontal_diffusion_coefficient = <default> 0.0 //some comments
tracer_vertical_diffusion_coefficient = <default> 1.e-04 //some comments
tracers_Hsmoothing = <default> FALSE //some comments
compute_diagnostics = <default> FALSE //some comments
##
#streamf
% if no line follow the tracers module use only defaults values
stream_function_computation = <default> FALSE //some comments
compute_interval = <default> 1800 //some comments
##
#constraints
% if no line follow the tracers module use only defaults values
use_internal_specifications = <default> FALSE //some comments
constraint_method = <default> CLAMPED //some comments
elevation_constraint_file = <default> NONE //elevation constraints (clamped or nudging) instruction file
constraint_start = <default> 0 //some comments
relaxation_time_scale = <default> 300 //time scale setting for nudging
relaxation_length_scale = <default> 1000 //length scale setting for nudging
relaxation_extent = <default> 1000 //extent length setting for nudging
max_data_gap = <default> 600 //some comments
apply_spatial_gradient = <default> TRUE //some comments
echoing_file_template = <default> NONE //if not NONE, will echo model values at constraint locations in files with name following template
echoing_interval = <default> 300 //echoing time sampling
##
#sediment
% if no line follow the tracers module use only defaults values
fluid_mud_flag = <default> FALSE //some comments
fluid_mud_friction_coefficient = <default> 1.18e-5 //some comments
fluid_mud_polygons = <default> NONE //some comments
fluid_mud_polygons_data = <default> NONE //some comments
fluid_mud_raster = <default> NONE //some comments
fluid_mud_smoother = <default> QUICK //some comments
fluid_mud_niterations = <default> 10 //some comments
##